DATASETS

We believe strongly in open science and, to the extent feasible, release all datasets for public analysis through Zenodo, MassIVE, or locally hosted interactive viewers - see below.

interactive viewers for pulse-labeling mass spectrometry datasets

 

Proteome turnover in human cells upon mtor inhibition

Interactive data viewer for “Integrated proteasomal and lysosomal activity shape mTOR-regulated proteome remodeling”.

  • Dataviewer for 577 proteins we analyzed in detail in our manuscript.

  • Dataviewer for a larger set of proteins, allowing viewing of degradation profiles specifically.

Proteome turnover in yeast cells in response to changing nutrient sources

Interactive data viewers for “Bulk and selective autophagy cooperate to remodel the P. pastoris proteome in response to changing nutrient availability”.

  • Dataviewer for protein degradation as cells adapt from growth in nitrogen-rich methanol based media (M+N) to growth in glucose in the absence of nitrogen (G-N).